Main vignette:Playing with networks using CNORfeeder2 years ago
Overview | Installation | Introduction | Example | Dynamic Feeder
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Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data with CellNOptR5 years ago
Installation | Introduction | Quick Start | Loading the data and prior knowledge network. | Preprocessing the model | Finding and cutting the non observable and non controllable species | Compressing the model | Expanding the gates | Preprocessing function | Training of the model | Plotting the optimised model | Writing your results | The one step version | A real example | A toy example with two time points | A toy example with the ILP implementation | k-fold Crossvalidation | What else
Contextualizing large scale signalling networks from expression footprints with CARNIVAL5 years ago
Introduction | Pipeline | ILP solvers | Prerequisites | Running CARNIVAL | Toy Example - 1 | Toy Example - 2 | Toy Example - 3 | Gurobi remote services